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Multiscale Modeling in Biological Systems
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Proceedings Papers

Modeling the Effect of Hemodynamics on Cardiac Growth During Embryonic Development

Sandra Rugonyi, Kent Thornburg
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 297-298, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13171
https://doi.org/10.1115/NEMB2010-13171
View Paper titled, Modeling the Effect of Hemodynamics on Cardiac Growth During Embryonic Development
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Topics: Hemodynamics, Modeling, Blood flow, Diseases, Dynamics (Mechanics)
Proceedings Papers

Modeling DNA Translocation Kinetics in Nanopores With Selectivity

Abhijit Ramachandran, Qingjiang Guo, Samir Iqbal, Yaling Liu
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 267-268, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13074
https://doi.org/10.1115/NEMB2010-13074
View Paper titled, Modeling DNA Translocation Kinetics in Nanopores With Selectivity
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Topics: DNA, Modeling, Nanopores, Manufacturing, Nanotechnology
Proceedings Papers

The Contribution of Proteoglycans on the Mechanical Properties of the Corneal Stroma

Hamed Hatami-Marbini, Peter M. Pinsky
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 299-300, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13175
https://doi.org/10.1115/NEMB2010-13175
View Paper titled, The Contribution of Proteoglycans on the Mechanical Properties of the Corneal Stroma
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Topics: Cornea, Mechanical properties, Elasticity, Biological tissues, Chain, Deformation, Density, Elastic moduli, Electric potential, Electrostatic interactions
Proceedings Papers

Multiscale Elastic Network Model for Macromolecular Machines

Moon K. Kim, Byeongsoo Lim, Wing Kam Liu
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 269-270, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13090
https://doi.org/10.1115/NEMB2010-13090
View Paper titled, Multiscale Elastic Network Model for Macromolecular Machines
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Topics: Dynamics (Mechanics), Machinery, Molecular machines, Network models, Proteins
Proceedings Papers

Silica Nanochannel Surface Effect on Monosaccharide Transport

Arturas Ziemys, Alessandro Grattoni, Jaskaran Gill, Mauro Ferrari
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 301-303, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13216
https://doi.org/10.1115/NEMB2010-13216
View Paper titled, Silica Nanochannel Surface Effect on Monosaccharide Transport
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Topics: Experimental methods, Glucose, Modeling, Molecular dynamics
Proceedings Papers

Hierarchical Structure Controls Nanomechanical Properties of Vimentin Intermediate Filaments

Markus J. Buehler, Zhao Qin
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 271-272, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13102
https://doi.org/10.1115/NEMB2010-13102
View Paper titled, Hierarchical Structure Controls Nanomechanical Properties of Vimentin Intermediate Filaments
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Topics: Biology, Biomechanics, Cellular mechanics, Mechanical properties, Mechanical stability, Proteins, Resilience
Proceedings Papers

Regulating Motion of Magnetic Capsules in Microfluidic Systems

Hassan Masoud, Alexander Kilimnik, Alexander Alexeev
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 305-306, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13244
https://doi.org/10.1115/NEMB2010-13244
View Paper titled, Regulating Motion of Magnetic Capsules in Microfluidic Systems
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Topics: Biological tissues, Biomedicine, Computer simulation, Drug delivery systems, Dynamics (Mechanics), Fluids, Magnetic fields, Microchannels, Microfluidics, Nanoparticles
Proceedings Papers

Transition Pathway for the Minus-End Directed Movement of Kinesin-14 NCD

Sirish Kaushik Lakkaraju, Wonmuk Hwang
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 273-274, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13106
https://doi.org/10.1115/NEMB2010-13106
View Paper titled, Transition Pathway for the Minus-End Directed Movement of Kinesin-14 NCD
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Topics: Molecular dynamics, Rotation, Thermal diffusion
Proceedings Papers

A Hybrid Model for Nanoparticle Targeted Delivery in Blood Flow

Yaling Liu, Jifu Tan, Samar Shah
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 307, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13253
https://doi.org/10.1115/NEMB2010-13253
View Paper titled, A Hybrid Model for Nanoparticle Targeted Delivery in Blood Flow
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Topics: Blood flow, Nanoparticles, Blood, Fluids, Erythrocytes, Fluid-dynamic forces, Platelets, Proteins
Proceedings Papers

Structure of Water Hydration Around Collagen

Krishnakumar M. Ravikumar, Wonmuk Hwang
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 275-276, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13108
https://doi.org/10.1115/NEMB2010-13108
View Paper titled, Structure of Water Hydration Around Collagen
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Topics: Water, Density, Molecular dynamics simulation, Proteins, Self-assembly
Proceedings Papers

Flow Structures in Three-Dimensional Fish-Like Swimming

Xing Zhang, Shizhao Wang, Guowei He
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 309-310, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13257
https://doi.org/10.1115/NEMB2010-13257
View Paper titled, Flow Structures in Three-Dimensional Fish-Like Swimming
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Topics: Fins, Flow (Dynamics), Vortices, Vorticity, Wakes
Proceedings Papers

Investigation of RBC Remodeling With a Multiscale Model

Qiang Zhu, Zhangli Peng, Robert J. Asaro
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 277-278, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13121
https://doi.org/10.1115/NEMB2010-13121
View Paper titled, Investigation of RBC Remodeling With a Multiscale Model
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Topics: Architecture, Composite materials, Deformation, Erythrocytes, Lipid bilayers, Membranes, Proteins, Separation (Technology), Stress, Structural stability
Proceedings Papers

Divide-and-Conquer Based Adaptive Coarse Grained Simulation of RNA

Mohammad Poursina, Kishor Bhalerao, Kurt Anderson
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 279-281, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13123
https://doi.org/10.1115/NEMB2010-13123
View Paper titled, Divide-and-Conquer Based Adaptive Coarse Grained Simulation of RNA
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Topics: RNA, Simulation, Modeling, Atoms, Biopolymers, Degrees of freedom, Equations of motion, Mechanical properties, Multiscale modeling, Oscillations
Proceedings Papers

Numerical Simulation of Arbitrarily Shaped Particle Transport in an Incompressible Flow

M. D. de Tullio, G. Adriani, P. De Palma, G. Pascazio, P. Decuzzi
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 311-312, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13267
https://doi.org/10.1115/NEMB2010-13267
View Paper titled, Numerical Simulation of Arbitrarily Shaped Particle Transport in an Incompressible Flow
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Topics: Computer simulation, Flow (Dynamics), Particulate matter, Dynamics (Mechanics), Biomedicine, Blood flow, Blood vessels, Cardiovascular system, Density, Design
Proceedings Papers

Fibrin Networks Sustain Large Extensions Due to Unfolding Proteins

Prashant K. Purohit
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 283-284, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13125
https://doi.org/10.1115/NEMB2010-13125
View Paper titled, Fibrin Networks Sustain Large Extensions Due to Unfolding Proteins
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Topics: Proteins, Fibers, Thrombosis, Constitutive equations, Elasticity, Mechanical properties, Shrinkage (Materials)
Proceedings Papers

Multiscale Modeling of Blood Flow in Cerebral Malaria

Dmitry A. Fedosov, Bruce Caswell, George Em Karniadakis
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 253-254, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13012
https://doi.org/10.1115/NEMB2010-13012
View Paper titled, Multiscale Modeling of Blood Flow in Cerebral Malaria
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Topics: Blood flow, Multiscale modeling, Adhesives, Dynamics (Mechanics), Membranes, Adhesion, Erythrocytes
Proceedings Papers

Modeling of Endothelial Cell Adhesion Dynamics Modulated by Molecular Engineering

Adrian M. Kopacz, Brandon J. Tefft, Shu Q. Liu, Wing K. Liu
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 313-314, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13269
https://doi.org/10.1115/NEMB2010-13269
View Paper titled, Modeling of Endothelial Cell Adhesion Dynamics Modulated by Molecular Engineering
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Topics: Adhesion, Dynamics (Mechanics), Endothelial cells, Modeling, Atherosclerosis, Linings (Textiles), Thrombosis, Blood vessels
Proceedings Papers

Swimming Microorganisms in Complex Media

Henry C. Fu, Vivek Shenoy, Thomas Powers, Charles W. Wolgemuth
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 285-286, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13155
https://doi.org/10.1115/NEMB2010-13155
View Paper titled, Swimming Microorganisms in Complex Media
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Topics: Microorganisms, Fluids, Kinematics, Shapes, Compressibility, Creeping flow, Inertia (Mechanics), Linings (Textiles), Reynolds number, Solids
Proceedings Papers

E-cadherin N-glycosylation Modulates the Strength of Adherens Junctions

Sarah J. Shareef, Mihai Nita-Lazar, Maria A. Kukuruzinska
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 255-256, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13013
https://doi.org/10.1115/NEMB2010-13013
View Paper titled, E-cadherin N-glycosylation Modulates the Strength of Adherens Junctions
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Topics: Junctions, Cancer, Adhesion, Tumors
Proceedings Papers

Finite Element Framework for Mechanics and Dynamics of Supramolecular Protein Assemblies

Do-Nyun Kim, Reza Sharifi Sedeh, Cong Tri Nguyen, Mark Bathe
Proc. ASME. NEMB2010, ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology, 315-316, February 7–10, 2010
Publisher: American Society of Mechanical Engineers
Paper No: NEMB2010-13312
https://doi.org/10.1115/NEMB2010-13312
View Paper titled, Finite Element Framework for Mechanics and Dynamics of Supramolecular Protein Assemblies
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Topics: Dynamics (Mechanics), Finite element analysis, Proteins, Computation, Finite element methods, Damping, Density, Electron microscopy, Electrons, Mechanical properties