Seepage into the repository drifts is an important factor in total-system performance. Uncertainty and spatial variability are considered in the seepage calculations. The base-case results show 13.6% of the waste packages (WPs) have seepage. For 5th percentile uncertainty, 4.5% of the WPs have seepage and the seepage flow decreased by a factor of 2. For 95th percentile uncertainty, 21.5% of the WPs have seepage and the seepage flow increased by a factor of 2. When seepage was forced on 100% of the WPs the seepage flow increased by a factor of 3.