One of the current technologies widely used to extract the earth’s renewable energy is solar modules, which harness energy from the sun; however, their operating conditions and their energy storage capacities vary greatly under different weather conditions. The high-speed Flywheel Energy Storage System (FESS) presents a promising prospective solution for solar energy storage and utilization. Accurately modeling FESS can lead to its efficient design and control. In this paper, a fully integrated FESS, with comprehensive photovoltaic (PV) system, has been modeled to simulate the overall energy harvesting capabilities, power output, and efficiency. The solar module has been modeled using the one-diode solar cell model technique to predict the overall system efficiency and determine the most efficient time of day for switching between the FESS’s charging (morning time) and discharging mode (night time). To validate the developed model using experimental data, four 250 Wp Ankara Solar PV modules and a Balance of System (BOS) were installed. The solar irradiance, wind speed, cell temperature, solar module, FESS output voltage and current were logged during the system’s operation. The theoretical model predicted that the energy output for the test day was 4.80 kWh, while the experimental analysis showed that the solar modules produced 4.68 kWh, only 2.5% percentage difference. The theoretical and experimental power curves followed the same trends throughout the day, which assures that the model could accurately predict the daily energy output of the solar array. The efficiency of the solar module was determined to be 15.3%. The solar module simulation serves as a repeatable replication of the actual solar module source, which enables convenient, low-cost estimation of the solar module-FESS system under different environmental conditions. The developed solar module was integrated with a brushless DC motor and flywheel models to simulate the FESS response. Relative to the input solar energy input of 4.68 kWh, the daily energy stored in a flywheel was 3.51 kWh, giving the overall solar-module-FESS system an efficiency of 74.7%. After the experimental setup completion of FESS, the integrated solar module-FESS model will be tested for its overall power output and efficiency against the traditional solar module-battery-system.